Dana-Farber Cancer Institute (DFCI)  | Dept of Cancer Biology (DFCI)  | Harvard Medical School (HMS)  | Dept of Genetics (HMS)     
2007 Publications
 
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Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, ElShamy WM, Rual JF, Levine D, Rozek LS, Gelman RS, Gunsalus KC, Greenberg RA, Sobhian B, Bertin N, Venkatesan K, Ayivi-guedehoussou N, Solé X, Hernández P, Lázaro C, Nathanson KL, Weber BL, Cusick ME, Hill DE, Offit K, Livingston DM, Gruber SB, Parvin JD, Vidal M.
Network modeling links breast cancer susceptibility and centrosome dysfunction.
Nat Genet 2007; 39:1338-49.
 
 
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-aryamontri A, Oesterheld M, Stuempflen V, Salvinski L, Nerothin J, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H.
Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions.
BMC Biology 2007; 5:44.
 
Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M.
Drug-target network.
Nat Biotechnol 2007; 25:1119-26.
 
 
Wang H, Segal E, Ben-Hur A, Li Q, Vidal M, Koller D.
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale.
Genome Biol 2007; 8:R192.
 
 
Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader G, Vidal M, Cusick ME, Gerstein M, Gavin A-C, Superti-Furga G, Greenblatt J, Bader J, Uetz P, Tyers M, Legrain P, Fields S, Mulder N, Gilson M, Niepmann M, Burgoon L, De Las Rivas J, Prieto C, Perreau VM, Hogue C, Mewes H-W, Apweiler R, Xenarios I, Eisenberg D, Cesareni G, Hermjakob H.
The minimum information required for reporting a molecular interaction experiment (MIMIx).
Nat Biotechnol 2007; 25:894-8.
 
 
Simarro M, Mauger D, Rhee K, Pujana MA, Kedersha NL, Yamasaki S, Cusick ME, Vidal M, Garcia-Blanco MA, Anderson P.
Fas-activated serine/threonine phosphoprotein (FAST) is a regulator of alternative splicing.
Proc Natl Acad Sci USA 2007; 104:11370-75.
 
 
Boehm JS, Zhao JJ, Yao J, Kim SY, Firestein R, Dunn IF, Sjostrom SK, Garraway LA, Weremowicz S, Richardson AL, Greulich H, Stewart CJ, Mulvey LA, Shen RR, Ambrogio L, Hirozane-Kishikawa T, Hill DE, Vidal M, Meyerson M, Grenier JK, Hinkle G, Root DE, Roberts TM, Lander ES, Polyak K, Hahn WC.
Integrative genomic approaches identify IKBKE as a breast cancer oncogene.
Cell 2007; 129:1065-79.
 
 
Bertin N, Simonis N, Dupuy D, Cusick ME, Han JD, Fraser HB, Roth FP, Vidal M.
Confirmation of organized modularity in the yeast interactome.
PLoS Biol 2007; 5:e153.
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL.
The human disease network.
Proc Natl Acad Sci USA 2007; 104:8685-90.
 
 
Denis-NatureBiotech07
Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabási AL, Baillie D, Vidal M.
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.
Nat Biotechnol 2007; 25:663-668.
 
 
Calderwood MA, Venkatesan K, Xing L, Chase MR, Vazquez A, Holthaus AM, Ewence AE, Li N, Hirozane-Kishikawa T, Hill DE, Vidal M, Kieff E, Johannsen E.
Epstein-Barr virus and virus human protein interaction maps.
Proc Natl Acad Sci USA 2007; 104:7606-11.
 
 
Rual_BMC_Genomics_07
Rual JF, Klitgord N, Achaz G.
Novel insights into RNAi off-target effects using C. elegans paralogs.
BMC Genomics 2007; 8:106.
Ceron J, Rual JF, Chandra A, Dupuy D, Vidal M, van den Heuvel S.
Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity.
BMC Dev Biol 2007; 7:30.
 
 
Lamesch P, Li N, Milstein S, Fan C, Hao T, Szabo G, Hu Z, Venkatesan K, Bethel G, Martin P, Rogers J, Lawlor S, McLaren S, Dricot A, Borick H, Cusick ME, Vandenhaute J, Dunham I, Hill DE, Vidal M.
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.
Genomics 2007; 89:307-15.
 
 
St Onge RP, Mani R, Oh J, Proctor M, Fung E, Davis RW, Nislow C, Roth FP, Giaever G.
Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.
Nat Genet 2007; 39:199-206.
 
Reece-Hoyes JS, Shingles J, Dupuy D, Grove CA, Walhout AJ, Vidal M, Hope IA.
Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.
BMC Genomics 2007; 8:27.
 
Yu A, Rual JF, Tamai K, Harada Y, Vidal M, He X, Kirchhausen T.
Association of Dishevelled with the clathrin AP-2 adaptor Is required for Frizzled endocytosis and planar cell polarity signaling.
Dev Cell 2007; 12:129-141.
Li J, Tewari M, Vidal M, Lee SS.
The 14-3-3 protein FTT-2 regulates DAF-16 in Caenorhabditis elegans.
Dev Biol 2007; 301:82-91.
Vazquez A.
Impact of memory on human dynamics.
Physica A 2007; 373:747-52.
 
 
 
 
 

                   

 

 

   

 

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