Dana-Farber Cancer Institute (DFCI)  | Dept of Cancer Biology (DFCI)  | Harvard Medical School (HMS)  | Dept of Genetics (HMS)     

2010 Publications 

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 Brehme_MolSystBiol_2010
Johannessen CM, Boehm JS, Kim SY, Thomas SR, Wardwell L, Johnson LA, Emery CM, Stransky N, Cogdill AP, Barretina J, Caponigro G, Hieronymus H, Murray RR, Salehi-Ashtiani K, Hill DE, Vidal M, Zhao JJ, Yang X, Alkan O, Kim S, Harris JL, Wilson CJ, Myer VE, Finan PM, Root DE, Roberts TM, Golub T, Flaherty KT, Dummer R, Weber BL, Sellers WR, Schlegel R, Wargo JA, Hahn WC, Garraway LA.
COT drives resistance to RAF inhibition through MAP kinase pathway reactivation.
Nature 2010; 468:968-72.
 
 Brehme_MolSystBiol_2010
Brehme M, Vidal M.
A global protein-lipid interactome map.
Mol Syst Biol 2010; 6:443.
 
 Brehme_MolSystBiol_2010
Qu ZH, Wang P, Song CM, Qin ZG.
Enhancement of scale-free network attack tolerance.
Chinese Phys B 2010; 19:110504.
 
 arabidopsis_consortium_plantcell
International Arabidopsis Informatics Consortium.
An international bioinformatics infrastructure to underpin the Arabidopsis community.
Plant Cell 2010; 22:2530–6.
 arabidopsis_consortium_plantcell
Song CM, Koren T, Wang P, Barabási AL.
Modelling the scaling properties of human mobility.
Nat Physics 2010; 6:818-23.

Heard_Nat_RevGenet_Cover_10

Heard E, Tishkoff S, Todd JA, Vidal M, Wagner GP, Wang J, Weigel D, Young R.
Ten years of genetics and genomics: what have we achieved and where are we heading?
Nat Rev Genet 2010; 11:723-33.  

Heard_Nat_RevGenet_Cover_10

Gaudet S.
Connecting cell fate decision networks in hematopoeisis from the outside in.
Mol Syst Biol 2010; 6:418.  

Heard_Nat_RevGenet_Cover_10

Dreze M, Monachello D, Lurin C, Cusick ME, Hill DE, Vidal M, Braun P.
High-quality binary interactome mapping.
Methods Enzymol 2010; 470:281-315.  
Giordana-Santini_NatMeth10
Giordano-Santini R, Milstein S, Svrzikapa N, Tu D, Johnsen R, Baillie D, Vidal M, Dupuy D.
An antibiotic selection marker for nematode transgenesis.
Nat Methods 2010; 7:721-3.
 
 
Yan_PLos_one_10
Yan H, Venkatesan K, Beaver JE, Klitgord N, Yildirim MA, Hao T, Hill DE, Cusick ME, Perrimon N, Roth FP, Vidal M.
A genome-wide gene function prediction resource for Drosophila melanogaster.
PloS ONE 2010; 5:e12139. 
Yan_PLos_one_10
Ahn YY, Bagrow JP, Lehmann S.
Link communities reveal multiscale complexity in networks.
Nature 2010; 466:761-4. 
Wang_plos2010
Wang J, Robida-Stubbs S, Tullet JM, Rual JF, Vidal M, Blackwell TK.
RNAi screening implicates a SKN-1-dependent transcriptional response in stress Resistance and longevity deriving from translation inhibition.
PLoS Genet 2010; 6:e1001048.

 

Schmidt_Biotechnol10
Schmidt BJ, Lin-Schmidt X, Chamberlin A, Salehi-Ashtiani K, Papin JA.
Metabolic systems analysis to advance algal biotechnology.
Biotechnol J 2010; 5:660-70.
 Mangone_science_10

Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak S, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins TT, Bouffard P, Suzuki Y, Sugano S, Kohara Y, Rajewsky N, Piano F, Gunsalus KC, Kim JK.
The landscape of C. elegans 3'UTRs. 
Science 2010; 329:432-5.

 

 Mangone_science_10

Lee SH, Kim PJ, Ahn YY, Jeong H.
Googling social interactions: Web search engine based social network construction. 
PLoS ONE 2010; 5:e11233.

 

 Nielsen
Beaver JE, Tasan M, Gibbons FD, Tian WD, Hughes TR, Roth FP.
FuncBase: a resource for quantitative gene function annotation.
Bioinformatics 2010; 26:1806-7.
 Nielsen

Nielsen J, Vidal M.
Systems biology of microorganisms.
Curr Opin Microbiol 2010; 13:335-336. 

   

Pilot
Pilot-Storck F, Chopin E, Rual JF, Baudot A, Dobrokhotov P, Robinson-Rechavi M, Brun C, Cusick ME, Hill DE, Schaeffer L, Vidal M, Goillot E.
Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase kinase-3 interactor.
Mol Cell Proteomics 2010; 9:1578-1593.
 
    
Pilot
Venancio TM, Balaji S, Geetha S, Aravind L.
Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.
Mol Biosyst 2010; 6:1475-91.
 
Pilot
Herrera M, Roberts DC, Gulbahce N
Mapping the evolution of scientific fields.
PLoS ONE 2010; 5:e10355.
 
 Gomez
Gómez-Baldó L, Schmidt S, Maxwell CA, Bonifaci N, Gabaldon T, Vidalain PO, Senapedis W, Kletke A, Rosing M, Barnekow A, Rottapel R, Capella G, Vidal M,
Astrinidis A, Piekorz RP, Pujana MA.
TACC3-TSC2 maintains nuclear envelope structure and controls cell division.
Cell Cycle 2010; 9:1143-1155.
 
 
 Balaji
Cenik C, Derti A, Mellor JC, Berriz GF, Roth FP.
Genome-wide functional analysis of human 5' untranslated region introns.
Genome Biol 2010; 11:R29.

 

 Balaji
Yadav VK, Balaji S, Suresh PS, Liu XS, Lu X, Li Z, Guo XE, Mann JJ, Balapure AK, Gershon MD, Medhamurthy R, Vidal M, Karsenty G, and Ducy P.
Pharmacological inhibition of gut-derived serotonin synthesis is a bone anabolic treatment for osteoporosis.
Nat Med 2010; 16:308-12.
 
 
 arabidopsis_consortium_plantcell
Song CM, Qu ZH, Blumm N, Barabasi AL.
Limits of predictability in human mobility.
Science 2010; 327: 1018-21.
 Balaji
Shen Y, Liu J, Estiu G, Isin B, Ahn YY, Lee DS, Barabási AL, Kapatral V, Wiest O, Oltvai ZN.
Blueprint for antimicrobial hit discovery targeting metabolic networks.
Proc Natl Acad Sci USA 2010; 107:1082-87.

 

 

 

 

 

 

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