Dana-Farber Cancer Institute (DFCI)  | Dept of Cancer Biology (DFCI)  | Harvard Medical School (HMS)  | Dept of Genetics (HMS)     

2014 Publications 

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  Combes JD, Chen AA, Franceschi S.
Prevalence of human papillomavirus in cancer of the oropharynx by gender.
Cancer Epidemiol Biomarkers Prev 2014 December 23; 2954-2958.
  Vidal M, Fields S.
The yeast two-hybrid assay: still finding connections after 25 years.
Nat Methods 2014 December 11;(12):1203-6.
  Gu L, Li C, Aach J, Hill DE, Vidal M, Church GM.
Multiplex single-molecule interaction profiling of DNA-barcoded proteins.
Nature 2014 November 27; 515:554-7.
  Rolland T, Tasan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, Yi S, Lemmens I, Fontanillo C, Mosca R, Kamburov A, Ghiassian S, Yang X, Ghamsari L, Balcha D, Begg BE, Braun P, Brehme M, Broly MP, Carvunis AR, Convery-Zupan D, Corominas R, Hardy M, Coulombe-Huntington J, Dann E, Dreze M, Dricot A, Fan C, Franzosa E, Gebreab F, Gutierrez BJ, Jin M, Kang S, Kiros R, Lin GN, Luck K, MacWilliams A, Menche J, Murray RR, Palagi A, Poulin MM, Rambout X, Rasla J, Reichert P, Romero V, Ruyssinck E, Sahalie JM, Scholz A, Shah AA, Sharma A, Shen Y, Spirohn K, Tam S, Tejeda AO, Trigg SA, Twizere J, Vega K, Walsh J, Cusick ME, Xia Y, Barabási AL, Iakoucheva L, Aloy P, De Las Rivas J, Tavernier J, Calderwood MA, Hill DE, Hao T, Roth FP, Vidal M.
A proteome-scale map of the human interactome network.
Cell 2014 November 20; 159:1212-26.
Highly Cited Paper from Web of Science Core Collection
  Gao J, Liu YY, D'Souza RM, Barabási AL.
Target control of complex networks.
Nat Commun.2014 Nov 12;5:5415.
  Brehme M, Voisine C, Rolland T, Wachi S, Soper JH, Zhu Y, Orton K, Villella A, Garza D, Vidal M, Ge H, Morimoto RI.
A chaperome subnetwork safeguards proteostasis in aging and neurodegenerative disease.
Cell Reports 2014 November 6; 3:1135-50.
  Wessling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Glasser C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P.
Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life.
Cell Host Microbe 2014 September 10; 16:364-75.
  Shen HW, Barabási AL.
Collective credit allocation in science.
Proc Natl Acad Sci U S A 2014 August 26; 111(34):12325-30.
  Hill SJ, Rolland T, Adelmant G, Xia X, Owen MS, Dricot A, Zack TI, Sahni N, Jacob Y, Hao T, McKinney KM, Clark AP, Reyon D, Tsai SQ, Joung JK, Beroukhim R, Marto JA, Vidal M, Gaudet S, Hill DE, Livingston DM.
Systematic screening reveals a role for BRCA1 in the response to transcription-associated DNA damage.
Genes Dev 2014 August 6; 28:1957-75.
  Schich M, Song C, Ahn YY, Mirsky A, Martino M, Barabási AL, Helbing D.
Quantitative social science. A network framework of cultural history.
Science. 2014 August 1; 345(6196):558-62.
  Wang W, Zhong Q, Teng L, Bhatnagar N, Sharma B, Zhang X, Luther W 2nd, Haynes LP, Burgoyne RD, Vidal M, Volchenboum S, Hill DE, George RE.
Mutations that disrupt PHOXB interaction with the neuronal calcium sensor HPCAL1 impede cellular differentiation in neuroblastoma.
Oncogene 2014 June 19; 33:3316-24.
  Jankovics F, Henn L, Bujna A, Vilmos P, Spirohn K, Boutros M, Erdelyi M.
Functional analysis of the Drosophila embryonic germ cell transcriptome by RNA interference.
PLoS One. 2014 June 4; 9(6):e98579.
  Xia X, Owen MS, Lee RE, Gaudet S.
Cell-to-cell variability in cell death: can systems biology help us make sense of it all?
Cell Death Dis 2014 May 29; 5:e1261.
  Zhou X, Menche J, Barabási AL, Sharma A.
Human symptoms-disease network.
Nat Commun 2014 May 27; 5:4212.
  Dittmer TA, Sahni N, Kubben N, Hill DE, Vidal M, Burgess RC, Roukos V, Misteli T.
Systematic identification of pathological lamin A interactors.
Mol Biol Cell 2014 May 25; 9:1493-510.
  Adamia S, Bar-Natan M, Haibe-Kains B, Pilarski PM, Bach C, Pevzner S, Calimeri T, Avet-Loiseau H, Lode L, Verselis S, Fox EA, Galinsky I, Mathews S, Dagogo-Jack I, Wadleigh M, Steensma DP, Motyckova G, Deangelo DJ, Quackenbush J, Tenen DG, Stone RM, Griffin JD.
NOTCH2 and FLT3 gene mis-splicing are common events in patients with acute myeloid leukemia (AML): new potential targets in AML.
Blood 2014 May 1; 123:2816-25.
  Deville P, Wang D, Sinatra R, Song C, Blondel VD, Barabási AL.
Career on the move: geography, stratification, and scientific impact.
Sci Rep 2014 April 24; 4:4770.
  Cokol M, Weinstein ZB, Yilancioglu K, Tasan M, Doak A, Cansever D, Mutlu B, Li S, Rodriguez-Esteban R, Akhmedov M, Guvenek A, Cokol M, Cetiner S, Giaever G, Iossifov I, Nislow C, Shoichet B, Roth FP.
Large-scale identification and analysis of suppressive drug interactions.
Chem Biol 2014 April 24; 21:541-51.
  Corominas R, Yang X, Lin GN, Kang S, Shen Y, Ghamsari L, Broly M, Rodriguez M, Tam S, Trigg SA, Fan C, Yi S, Tasan M, Lemmens I, Kuang X, Zhao N, Malhotra D, Michaelson JJ, Vacic V, Calderwood MA, Roth FP, Tavernier J, Horvath S, Salehi-Ashtiani K, Korkin D, Sebat J, Hill DE, Hao T, Vidal M, Iakoucheva LM.
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.
Nat Commun 2014 April 11; 5:3650.
  Chen AA, Heideman DA, Boon D, Gheit T, Snijders PJ, Tommasino M, Franceschi S, Clifford GM, IARC HPV Variant Study Group.
Human papillomavirus 45 genetic variation and cervical cancer risk worldwide.
J Virol. 2014 April; 88(8):4514-4521
  Lee RE, Walker SR, Savery K, Frank DA, Gaudet S.
Fold change of nuclear NF-κB determines TNF-induced transcription in single cells.
Mol Cell 2014 March 20; 53:867-79.
  Adamia S, Haibe-Kains B, Pilarski PM, Bar-Natan M, Pevzner S, Avet-Loiseau H, Lode L, Verselis S, Fox EA, Burke J, Galinsky I, Dagogo-Jack I, Wadleigh M, Steensma DP, Motyckova G, Deangelo DJ, Quackenbush J, Stone RM, Griffin JD.
A genome-wide aberrant RNA splicing in patients with acute myeloid leukemia identifies novel potential disease markers and therapeutic targets.
Clin Cancer Res 2014 March 1; 20:1135-45.
  Chen AA, Heideman DA, Boon D, Chen Z, Burk RD, De Vuyst H, Gheit T, Snijders PJ, Tommasino M, Franceschi S, Clifford GM.
Human papillomavirus 33 worldwide genetic variation and associated risk of cervical cancer.
Virology. 2014 January 5; 448:356-362 .
  Musso G, Tasan M, Mosimann C, Beaver JE, Plovie E, Carr LA, Chua HN, Dunham J, Zuberi K, Rodriguez H, Morris Q, Zon L, Roth FP, MacRae CA.
Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish.
Development 2014 January 1; 141:224-35.




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